Scaffold B570J13893_100004

Overview

Basic Information

• Taxon OID: 3300001273
• Scaffold ID: B570J13893_100004
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20672
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024717	Metagenome	204	Y
F034061	Metagenome	175	N
F061497	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J13893_1000041	F061497	N/A	MIDITLEGGYVTFYTSVLGAIASNVELCEVVDENCLHLGTNVGVFLINVNQFTFNGIKFTDSIKAVNYILNN*
B570J13893_1000043	F024717	N/A	MATPKEISDRINALFSDWNSGFTPLSFAVQDMRREMYIRIFGIDTGRGRNQAGNFLPTKPYTPAYAKIKAANGKPPLELTGFLKRSFATDQTTVVTEGFDTAIYTVADEAGKVEGLEKLYGTIFKPTAEEQSRMLQLHADLLVEQIANQISKP*
B570J13893_1000044	F034061	N/A	MCYESLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLTPMMKADTVVESKRIGQVVSNAANIDTMVGAGKYTGIRVTIDPNTESFLNFYLSNFKIDIYTMAVPVEIFVYDMTTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMIPKKGHCFDCSGNVRGAHICPFVDAVGIELTVSGDDVISSKSKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLTISPNQRVNTTVSVNTGFATSDPNDGMIAGRDIAATRYSEELTAMLQNMRLPSDNTCFDCRRNMKYVTALP*