Scaffold B570J13886_101321

Overview

Basic Information

• Taxon OID: 3300001272
• Scaffold ID: B570J13886_101321
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20MAY2010 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1671
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033356	Metagenome / Metatranscriptome	177	Y
F048763	Metagenome / Metatranscriptome	147	N
F050791	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J13886_1013213	F050791	N/A	MTKTRSTTAKQNNKPTTKSTEIKTIVIPKHLIELITFLHEANKIQFDLTKTLLDRMKDDNSTNQ*
B570J13886_1013214	F033356	N/A	MTTQLTNNSSINPLQDDILPQEDQRPKTHLQLQYITQTNRLPFTEAHQEQYSANVTINPFKLLELHNKLIVIEGQLSHLTDKVAAIVVEIHKMTHQN*
B570J13886_1013215	F048763	N/A	MNYPPSQPISTFLQQRPPPTTQTDCFFTYTRISSQCKPVDRIADSIDPFELANNTNQIPSSNIAQDVHHSVNTLYDIQKSIFSSLTPTQTTLFTTYHNLLVSISRYLSQSENIPQP