Basic Information | |
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Taxon OID | 3300001272 Open in IMG/M |
Scaffold ID | B570J13886_100675 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 20MAY2010 deep hole epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2535 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F032577 | Metagenome / Metatranscriptome | 179 | N |
F033356 | Metagenome / Metatranscriptome | 177 | Y |
F048763 | Metagenome / Metatranscriptome | 147 | N |
Protein ID | Family | RBS | Sequence |
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B570J13886_1006752 | F032577 | N/A | MSAHMHIANNYNDVVDVITSLIAIYAXTISVEPTIQQAINKRQEXTQIASKLXHSLLPMLYGCNAIELSDLQAHYNDLKRTISRSFAVXLEHPRAHRAFDPNP* |
B570J13886_1006756 | F048763 | N/A | MNYPPSQPIATFLQQRPPPTTQTDCFFTYTRISSQCKPVDRIADSIDPFELANNTNQIPSSNIAQDVHHSVNTLYDIQKSIFSSLTPTQTTLFTTYHNLLVSISRYLSQSENIPQPMPAPRIRYSPPPQ* |
B570J13886_1006757 | F033356 | AGCAG | MTNQLTNNSSINPLQEDILPQEDQRPKTHLQLQYITQTNRLPFTEAHQEQYSANVTINPFKLLELHNKLIVLEGQLSHLTDKVAAIVVEIHKMTHQN* |
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