Scaffold B570J13886_100401

Overview

Basic Information

• Taxon OID: 3300001272
• Scaffold ID: B570J13886_100401
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20MAY2010 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3521
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032577	Metagenome / Metatranscriptome	179	N
F033356	Metagenome / Metatranscriptome	177	Y
F048763	Metagenome / Metatranscriptome	147	N
F050791	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J13886_1004012	F032577	N/A	MSAALHIATNYNDVVDVITSLIAIYARTISVEPTLQQAINKRQEHTQIASKLYYSLLPMLYGCNAIELSDLQAHYNDLKRTISRSFAVDLEHPRAHRAFDPNP*
B570J13886_1004014	F048763	N/A	MNYPPSQPIATFLQQRPPPTAQTDCFFTYTRISSQCKPVDRIADSIDPFELTNNPNQIPSSNIAQDVHHSVNTLYDIQKSIFSSLTPTQTTLFTTYHNLLVSISRYLSQSENIPQPMPAPRIRYSPPPQ*
B570J13886_1004015	F033356	AGCAG	MTNQFTSNSSLNPLQEDILPQEDQRPKTHLQLQFIKQTNRLPFTEAHQDQYSANVTINPFKLLEIHNKLIILEGQLSHLTDKVAAIVVEIHKMTHQN*
B570J13886_1004016	F050791	N/A	MTKTRSTTAKQNXXTKTKTTETKVIAIPKHLIELITLLHEANKIQFDLTKELLSRMEDDKPIHQ*