Scaffold B570J13875_100002

Overview

Basic Information

• Taxon OID: 3300001267
• Scaffold ID: B570J13875_100002
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37520
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (80.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002343	Metagenome / Metatranscriptome	568	Y
F042306	Metagenome	158	Y
F062712	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
B570J13875_1000022	F002343	AGGAG	MSDAKLEMTLEEAVAIVNLLGSLPTSQGGFPLWQKLKAQVEAQVPKEQPEQMQ*
B570J13875_10000249	F062712	GAGG	MNGRRPMNMPMQPDRRPQELARMLAMQERNASLDGMTPRQPQQPSLAYAGATPNSAPGVAPQNMNFNGPRGPAQYTGPISNPAMSAMAPPQQGAPQVGGMKRPQGAGARGYPSSPGMTTPQGGTYRGDFDGN*
B570J13875_1000028	F042306	GGA	MAKDNRYKAVQIIDGTWYRIKGYTHAECCDCALVHKEQYRLVDGQLEWMAERDDEATKARRKELGIKVTRNAKAHKR*