NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SwM_110045

Scaffold SwM_110045


Overview

Basic Information
Taxon OID3300001228 Open in IMG/M
Scaffold IDSwM_110045 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - 12_joined
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)518
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Knoxville, Tennessee, Usa

Source Dataset Sampling Location
Location NameEast Tennessee Research and Education Center, Knoxville, Tennessee, USA
CoordinatesLat. (o)35.9606Long. (o)-83.9208Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091754Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
SwM_1100452F091754GAGMRIGLAYNQKPDTDPTPDRASKTADVYAEWDEPSTIDAVEQALG

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