Scaffold JGIcombinedJ13530_107650656

Overview

Basic Information

• Taxon OID: 3300001213
• Scaffold ID: JGIcombinedJ13530_107650656
• Source Dataset Name: Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 673
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location

• Location Name: Twitchell Island in the Sacramento/San Joaquin Delta, CA
• Coordinates
  • Lat. (^o): 38.107057
  • Long. (^o): -121.647578
  • Depth (m): 0 to .12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F008688	Metagenome / Metatranscriptome	329	N
F010081	Metagenome / Metatranscriptome	308	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ13530_1076506561	F008688	N/A	MNRFNKIMLGSLTAILLTAMTVEPPKLKVYLITSYRGNDLTIEKVYLKKENAEKYRDMYKESHNYSVEERELTE*
JGIcombinedJ13530_1076506562	F007859	GAG	MKNLLIIALLCTGCTSGMYLRYSYNRALENLPLCSRVHAINNDYITYSMIEQSTNNVYTTYTNYYRAYYNCDGKIVKTTKN*
JGIcombinedJ13530_1076506563	F010081	N/A	MKEQIDSIIKKHCLKMQEVDKTKSIPMIVKDLDHIVYEMYRELYGLRDIRASNYHLNSFTAD