Scaffold BBAY88_1000197

Overview

Basic Information

• Taxon OID: 3300001183
• Scaffold ID: BBAY88_1000197
• Source Dataset Name: Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY88
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12700
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.13%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location

• Location Name: Botany Bay, Sydney, NSW, Australia
• Coordinates
  • Lat. (^o): -33.966629
  • Long. (^o): 151.166614

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
BBAY88_100019711	F006666	N/A	VKPKSHKEFKKGIADEVGVHQSVVDDFLSFYYAKVRSKLSSLDFPRVYLEGLGTFYLRKNKLEKAIKKNKSILGNLAKRTYAGFAKSEDVQKDIEQMEQALYQMEQDILNKKNFKNER*
BBAY88_100019712	F004866	GAG	MALVNKVDLKLQVDLDVSIKYQIVTYCFFNETLISNSDLKFLSELGKAGKIELTKFCTDLVKQNIFKSSQSARNAITKAEKKGLLTKQGVNKKTITLNKAINVQTDGLVLLDYKVLGREAQES*