Scaffold JGI12639J13247_102692

Overview

Basic Information

• Taxon OID: 3300001168
• Scaffold ID: JGI12639J13247_102692
• Source Dataset Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 740
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055024	Metagenome / Metatranscriptome	139	Y
F061057	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12639J13247_1026921	F055024	N/A	ISHPIFKTQVRGLTILMDLSHRESAKSQTVFLGHKPLFF*
JGI12639J13247_1026922	F061057	GGAG	MRRISGRYLLAVLLLSISTTALAQNLDADQKAYCTYLDEQAKAQSDLLRTPGALGAFTQPDTGLPLQLVAGAQLSLSNLKKSGITLEAARKNCELYKAATTVQLTLQYALPAVEKDALTHRLLLIDEASKSLEALIATTTQMVQAQDMTRPMLVSLLSTRIKLDEDRADTQTKIAALYVPQLSDQPLKLQVGAK