Scaffold JGI12636J13339_1004406

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12636J13339_1004406

Scaffold JGI12636J13339_1004406

Overview

Basic Information
Taxon OID	3300001154 Open in IMG/M
Scaffold ID	JGI12636J13339_1004406 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2314
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000169	Metagenome / Metatranscriptome	1788	Y
F001597	Metagenome / Metatranscriptome	666	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12636J13339_10044063	F000169	GGAGG	MARKSRFTRVAERIGSAVGRADRTAHKVAKAGVLARRELEDISKQVDALKRQLQKTTKRLKRALR*
JGI12636J13339_10044064	F001597	GGAG	MRDESTKQAAQEYLAAKITEEDQKYEDERNMATAVARSLQVWKRFKDAIVAQCNVWNTVTQEETLACRETLLGDLRIWCAAQSKQMTAQFDSTKLLITVKNAGRLENEKDVILRIEGYRTGADRDDRDARLMRNEQPVNIDMLVLGELRVLAGMGRQRNP*

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