Scaffold JGI12713J13577_1000001

Overview

Basic Information

• Taxon OID: 3300001151
• Scaffold ID: JGI12713J13577_1000001
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 236966
• Total Scaffold Genes: 212
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 169 (79.72%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006512	Metagenome / Metatranscriptome	371	Y
F027919	Metagenome / Metatranscriptome	193	Y
F036335	Metagenome / Metatranscriptome	170	Y
F037322	Metagenome / Metatranscriptome	168	N
F089217	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12713J13577_1000001176	F027919	GGAGG	VRSMARLCLVVLLVTSLLDIPAFAAAEKPLGMVIQAQEALLDKAKLQVGTSIYGGDTVVTDAGGGLRLKLGGSQLYLLADSAATLSQNTTVVHAVVARGTVGFSSNGADNVELEIPEGILRAADGQPAYGQVTILSAQEVVISAYRGALVLDNDGEMHTIPAGKNYRVTMEWEQSDQQSPAASTGGDNPIIQPRKRRRRKLAFYLIFAGAMAGISVAIWDHLDQSPSNFK*
JGI12713J13577_1000001182	F006512	AGGAGG	VRYILKSFLVAILSVGLIGIPSFAANERPLGLVTQAQEAHLGSATVAIGTTVYPGDTLATDEGGTVRLKVGGSQFYLLSSSAATLSAGSNVVNASVARGTVGFSSNGSDQLSLEIPEGTLRAANGQPGYGQVTILSPREVIISAYRGTLVLDNDGDLHEIPAGKSYRVTMDLDPAVEPQGPAGAGGNNKVVAPRHRHLLFDLIVLGAAAGAGVALWYHLSESPSNPNQ*
JGI12713J13577_1000001208	F036335	AGGA	MEVFVFLVVAAACGFFLYALVQFSLEEKHLRQRRQTPPGFPVISSGQIVMPLEPSRKERRKNSANQKTHN*
JGI12713J13577_100000130	F089217	GGAG	MKTNTVAKISMFAVALGFACMLPATARAQSDVMPDSYAFSAEETAAVQPLQSAGAAIAKADFEGRVSLPYDVKCEGKNLKAGQYFVSVKSEGENRVVTLHGSGQNVNVRVHEVPANRAASQSVLMVRKAGDGRSVEALYVKALNTTLYLDSSLNGTHVGMDRLPIS*
JGI12713J13577_100000182	F037322	GAG	MKNLLILAIFVAVLVLVILVGLPRLPRQETAARKPQPAPWNSSAIQSTFAGAQVQEADPTHATLEFFFDLDNNTDTDYRFAKGAGTVVMTRLKSNGSLSSEQPIELNNSVFLPARNRTRIAVQVTRPFNWPSGLPGGQIGPVNQLKFRQLVADEVGNFSGFVMFDTATHFQIELPGGWQELQAPASAAVLN*