NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12682J13319_1012647

Scaffold JGI12682J13319_1012647


Overview

Basic Information
Taxon OID3300001145 Open in IMG/M
Scaffold IDJGI12682J13319_1012647 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)609
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018767Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
JGI12682J13319_10126471F018767N/AMQKAHLYEAILLVNRGVDEAVRGLERLKRTKDSQLDSSCFDEELVLFEDHRARLNSYFCSTLQRTEQRDSVRFETRHREYERNTLDEVQVYLDLRVVEDRRRVEGKPPKVLHAGRAMRLGTAVPKACRRYSADGR*

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