Scaffold JGI10220J13317_10450856

Overview

Basic Information

• Taxon OID: 3300001139
• Scaffold ID: JGI10220J13317_10450856
• Source Dataset Name: Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1195
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: Iowa, USA
• Coordinates
  • Lat. (^o): 43.303333
  • Long. (^o): -89.3325

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029527	Metagenome	188	N

Sequences

Protein ID	Family	RBS	Sequence
JGI10220J13317_104508562	F029527	N/A	FSVWRIRFSMKPRIVAICATVALVTCCDSAPAQFTDCAYITVFNPCPVSSETRGECEPIIDPQIACQDCLPGAAAWWVVNNHKDEEAKVRIRVTLWDRALGTSTFTDQALTLAPGEKRPLGCSLPAPQPQYTWSIEDCQPHSEQVFAPEQLTPTEKKFADAQDAFIDHVGQLWNANLESNYRQLVPGTVRVELSTSPEGELVETSVLSNTSNELAAQLITEAIRPAIRFLATGKSSKITAEVTAFAAEGSDLEPRHKRPRLNVSVSQGGLHYPYERSATFSFHDISELNGLGPK*