NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI1684J13235_1006244

Scaffold JGI1684J13235_1006244


Overview

Basic Information
Taxon OID3300001136 Open in IMG/M
Scaffold IDJGI1684J13235_1006244 Open in IMG/M
Source Dataset NameMarine sediment microbial community from Fremont, CA, USA - Pond A23 Sediment 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3166
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location NameAlviso Ponds, San Francisco, CA, USA
CoordinatesLat. (o)37.474067Long. (o)-121.973033Alt. (m)Depth (m).075
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022890Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
JGI1684J13235_10062443F022890N/AMTTRKLVNLMMKSSDHNPYTGKLSESDNVLAAIELAKKFKEFADEGYTDEAMDVESSQWIEVINKLEEKRLNCA*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.