NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI1684J13235_1001955

Scaffold JGI1684J13235_1001955


Overview

Basic Information
Taxon OID3300001136 Open in IMG/M
Scaffold IDJGI1684J13235_1001955 Open in IMG/M
Source Dataset NameMarine sediment microbial community from Fremont, CA, USA - Pond A23 Sediment 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6870
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location NameAlviso Ponds, San Francisco, CA, USA
CoordinatesLat. (o)37.474067Long. (o)-121.973033Alt. (m)Depth (m).075
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098766Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
JGI1684J13235_100195510F098766GGAGGMSHPTCSICGREADGANHVRVEVARVPPEEPPKTYYFHPWCFENAQSWERGV*

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