Scaffold JGI12631J13338_1001272

Overview

Basic Information

• Taxon OID: 3300001131
• Scaffold ID: JGI12631J13338_1001272
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6577
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000192	Metagenome / Metatranscriptome	1666	Y
F055952	Metagenome / Metatranscriptome	138	Y
F102977	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12631J13338_10012721	F102977	N/A	AVVMVAAVAVGFLFRPRKDMFYLRTTLILSEPDYRLSVEHDRIALRVELARLWLLFLPTFAAVAFLIVTSAKGTTWDFSLFDRFGEAGSYPIYLGIRAFQVIVVGFLSTWISERWVLRDAEACSADSVSMKTGTMLYSFKDRLGEYYGGEGFPFALVRSPKLARIVFYRPAKPELNKIAMGCLFHRLVIVGHGLMDLDEATVSSHSTEVQPVSQPL*
JGI12631J13338_10012722	F000192	GGAG	MAANQVVLYFEKPEDALLFTLAASSVMSAEGSLHSSKPAVRVAQEICKASRITTEGALDIT*
JGI12631J13338_10012728	F055952	AGGA	MRGSFLSFSQPSPIMLVGLLLLSTPFLWAQRTLSPEKVPIHLLETPASFARVSEEQTPLHLTDRKLPLTFERNQGQTDSRMRFLPHYPGDYRLPATATLYPATRTAERGAKLWDKDKYLVGNAPSKWRTFSFALTNGNIPRETMCCVGDLENYGHRIPWAGSIILRILQQAKAHPNVTRVLTVLKPQF*