Scaffold JGI12631J13338_1000164

Overview

Basic Information

• Taxon OID: 3300001131
• Scaffold ID: JGI12631J13338_1000164
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21660
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010701	Metagenome / Metatranscriptome	300	Y
F023653	Metagenome / Metatranscriptome	209	Y
F027975	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12631J13338_100016411	F027975	GGA	LPPATAEIIKHCVIVDEENANTVTCRWLAVTTVIDSKTGHTTLLCKKMKEE*
JGI12631J13338_100016412	F010701	AGGAG	MTFLLLGLAAVAWAGHSLITGKGNYKGCPPGGFDRTADPFNYWVPTIIILALGVCLILTFLGVIPLPLGSRG*
JGI12631J13338_100016417	F023653	GGA	MPKTRLYVECPNCHMQYLMKEFGLTYSNGAYIENLAGQPDWQRLFCPCQPEPHKFKLSETQRLRVFSSDENEKTHYPPRSAASASKDKKKKKDLQ*