Scaffold JGI12631J13338_1000122

Overview

Basic Information

• Taxon OID: 3300001131
• Scaffold ID: JGI12631J13338_1000122
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25544
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000359	Metagenome / Metatranscriptome	1236	Y
F000985	Metagenome / Metatranscriptome	813	Y
F011689	Metagenome / Metatranscriptome	288	Y
F027945	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12631J13338_100012216	F027945	AGGAG	VNADVHEQARKLIASAGPEVHLGGEASPSANAWLAAHLQTCASCRAFAENAAETIRGLRAIPIAAERSLVLTTQMRVRRRALELQRQRERLWLVSVSCIAVTLGALLSSVALWRGFAWLGERAQLAPPVWQVGFLVFCVMPALVAAILLLARGTHCDSHLADQTGSYRG*
JGI12631J13338_10001223	F011689	N/A	MGSIQATHSHADDSVTSHHSCTICATAHAGVSTQVVASTPVLAMAVLASPVAEVSAIFRPAVAQFIRPPPAL*
JGI12631J13338_10001225	F000359	GGAG	MSGQVILYFEDQADALRFALAAGSVMAGDGSRATDDLVVETARVTRIRLDAPNKGKSRQPNPPERVA*
JGI12631J13338_10001229	F000985	AGG	MKNVYEVLRQKELELTRLEKEVEALRVAAPLLSEEKESLAEAPKSSLTATPTPQPVRIPPAVAAQAATAPARVAGWEEAAKRWP*