Scaffold JGI11984J13269_104871

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI11984J13269_104871

Scaffold JGI11984J13269_104871

Overview

Basic Information
Taxon OID	3300001129 Open in IMG/M
Scaffold ID	JGI11984J13269_104871 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Indian Ocean - MP1141
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	547
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Indian Ocean
Coordinates	Lat. (^o)	-29.65	Long. (^o)	92.99	Alt. (m)		Depth (m)	2402.15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002753	Metagenome / Metatranscriptome	532	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11984J13269_1048711	F002753	N/A	RFTPADFAIESVKLTVSDRFTPADFAIESVNDTDSERFTPAAFAIESVNDTDSEIFTPDVFEIESVNNTVSDRFTPADFAIESVKLTVSDRFTPAAFEIESVKLTVSDRFTPAVFDIESVNNTVSDRFTPAVFEIESVNDTDSDRFTGAVFEIESVKLTVSDRFTPAVFDIESVNNTVSDRF

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