Scaffold JGI12627J13344_100479

Overview

Basic Information

• Taxon OID: 3300001116
• Scaffold ID: JGI12627J13344_100479
• Source Dataset Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7327
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024393	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12627J13344_1004793	F024393	AGGAG	MSLNESSATALVRFTGLGIVCFNKERQRGEIAAIRDNKHTLTIRVQKPVFQDGADRDIIVYQDIAAYEKLPKNDVQIEIKGVANPAIEGYEIYQSGDFDRLDSADVNDFRWIVNMHTLHGASGLVPTAKQNYPLAKLYIENGLFYTHKLDRNFFFEKVERDSGGTVTQREVFGNVAETIGVKLEANEVTFTIRIGHQEERHSLKHVAGLPYRIEIQNMDYSAAAVYSDMPDYYQYLSSPSGKHFDLTPIVEDADETAKGDSISQKDFCHPVVIENPPSIDYL*