Scaffold JGI12683J13190_1001066

Overview

Basic Information

• Taxon OID: 3300001089
• Scaffold ID: JGI12683J13190_1001066
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4017
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F013395	Metagenome / Metatranscriptome	271	Y
F051385	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12683J13190_10010663	F013395	N/A	MKRALFAGAILLLGAVISARSKTEPLLFVFLRVDHGQDIAILRPMIAPDIGVQLDSGPRKLEPGTVVTCAMLAREHAAIVEGQASKVSEIVLDCGEHKFVVKTLDFAPDRK*
JGI12683J13190_10010664	F000512	N/A	MIHVLRETHDTPAGVARSLELAGGINRFREPNYRAVWGWNRLAWIGGRFEERDPATGSVLREVVDLRQEPKYPAVNRWHIERWLPPETYGSPRAWWAQTIEVEGGRSIPALGPYPARGEYEHCFTLEGPRGEFVQLTPTIAEHITRAIEWSRRHPRSAGKRALYDRDGRQDRTYDACAYDLLDDAVPAFHKQPFVTVM*
JGI12683J13190_10010665	F051385	GAGG	MYGYNWLRIASGLALLFSSVMVVAQSLLKNDWGNQLYYGTSLIAVFGYLFLTSRSKEEERDSPWWW*