Scaffold JGI12683J13190_1000802

Overview

Basic Information

• Taxon OID: 3300001089
• Scaffold ID: JGI12683J13190_1000802
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4595
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F018221	Metagenome / Metatranscriptome	236	Y
F047513	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12683J13190_10008026	F047513	N/A	MFPLEVPLNYKTEPPWEFLLSASRNSLQSYELSRLSHAANLRKEITQLLDSWLEENTAAMLARWLMEQRERPLAPMGNEEQTSACDARGKAAHAVSDNFFADQAGSPPELRTRS*
JGI12683J13190_10008028	F018221	AGGAGG	MGRKQGKRTARRAMPTQRDVLRDVMLAAEKYGAWMTLRELARLTRYGETSISAQLRHLRKTKCGGYVLEKRVRRPEVVNSEEHFVVWEYRLTPRRRTLARRLVELRRRRLQ*
JGI12683J13190_10008029	F000188	GGAG	MSVKPEMAFDVCWEVYRGAREVLEAKRGMSAMDWKEATKFLWRPDFRPRLAEWVADFALAGQAALDGPDWASRMVMFRLYYLGLAPYENARHFLGLSEQGWVNWSEEVRRRCGKELLRRGMFPPRKYFGNSA*