Scaffold JGI12709J13192_1000390

Overview

Basic Information

• Taxon OID: 3300001086
• Scaffold ID: JGI12709J13192_1000390
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8075
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005396	Metagenome	402	Y
F016601	Metagenome / Metatranscriptome	246	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12709J13192_10003906	F016601	AGGAG	MKPLNAELAARAWEFAQGLDLEEYRRLQREVRSAWPATTKLQGLDFDRAFLAFIAERWIDKAA*
JGI12709J13192_10003909	F005396	AGG	VASSRSLGVLFSLLVATLMAACGEDTGAAPPLQASAASSVGCKSGHGYQHTTLGYHLCFPDNWISRDYTAEPGSGGAVSVVALGAPSSVPTHVPASGTLTPPIEIRVVAGPKDQAEVSLARGNTVTSTTVAGIKADRIKVVDSGPANGAVIVVFERQGNTFEIEEAPGGTADAAFQQVLDSFSFPAS*