Scaffold JGI12664J13189_1000209

Overview

Basic Information

• Taxon OID: 3300001082
• Scaffold ID: JGI12664J13189_1000209
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8233
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F003669	Metagenome / Metatranscriptome	474	Y
F013120	Metagenome / Metatranscriptome	274	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12664J13189_100020911	F003669	AGGAGG	MCPFCLATMGFVVAGAVSTGVLAALAVKVSRKRNGAEEIISNLNNKEK*
JGI12664J13189_10002095	F013120	GGAGG	MEYFRFDHPPDRLILCDRSNCETIADYLEINEHGREDFVCAAHTSSERHASVLPKGVPNGERHGSRTTP*
JGI12664J13189_10002096	F000042	AGAAGG	MKNTKFVVKLSRGATRAPEFVLRIDRTPIQMTTNRKLALVMGKFAAEDTINSLQNSRRTPELIAVQVECGQLAV*