Scaffold JGI12664J13189_1000041

Overview

Basic Information

• Taxon OID: 3300001082
• Scaffold ID: JGI12664J13189_1000041
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16451
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002102	Metagenome / Metatranscriptome	593	Y
F003000	Metagenome / Metatranscriptome	514	Y
F046501	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12664J13189_100004111	F003000	N/A	MKANTKLDEMHDRLIDFHLRNPKERIGNVLLMWVEDPLKPRDEHGRLRVNPVLLLLAIVFVFVFGIFLVFSLVQA*
JGI12664J13189_100004114	F002102	AGGAG	MLKDEKENRSQPRSGALDKLEPGGESGPLDDRNEYEQRLNSLPAEQKDLAEESTRFADLCQYFSQQRMDIPASIVERVRNVSKLPVPDRIRAMKDINHELMEYLNDVGQDPGIRQ*
JGI12664J13189_100004117	F046501	N/A	MPPFSHLRSDYPLDLTLLERPYACALKQSYRAGLPSARAIPVSLIGSNWWLLSRPFVDRAFDAQHYSGAIGRHFHSVEPRICARSRTDFCSPACAPSTIESTCGLTHACALVREFRLNIDKQLAHLVEHWCASARGNGGPCSYALTLSLVSPDAALYAVVAVHLLSTAGRHSPITTVLCPAFQMWNSTQRGTSGLSLSGVPVRGQQGKSDQLKSDRPRRST*