NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI10216J12902_119177362

Scaffold JGI10216J12902_119177362


Overview

Basic Information
Taxon OID3300000956 Open in IMG/M
Scaffold IDJGI10216J12902_119177362 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1310
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.214012Long. (o)-96.585283Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003995Metagenome / Metatranscriptome458Y
F015636Metagenome253Y
F058778Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
JGI10216J12902_1191773621F015636AGGAGGMKPLIELSIEHYEALLKRASQESPLYFRLKNAVKPQPNIVAVLCNLDEAEMLLQVAKHFCPGAVPEIEKEIRLVQRVS
JGI10216J12902_1191773622F003995N/AMPLSREEIKKRMDELVHKYVETHDPEIIRELYQLVLQLEKLNEQSDC*
JGI10216J12902_1191773623F058778AGGAMTVLEALAILQAATLECKKRNINTPEVSEALDSLERYIWPKWLVPQFRDHALKERTNNDVDREGQQQVLRPTFNGIRKSFRVLLEVRTDALARKFHETHDMTVKDELERLLKEYGKLKEPWVL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.