NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI10216J12902_111219421

Scaffold JGI10216J12902_111219421


Overview

Basic Information
Taxon OID3300000956 Open in IMG/M
Scaffold IDJGI10216J12902_111219421 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)874
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.214012Long. (o)-96.585283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F001079Metagenome / Metatranscriptome785Y
F001935Metagenome / Metatranscriptome615Y

Sequences

Protein IDFamilyRBSSequence
JGI10216J12902_1112194211F001079N/AMATAGTDMPSALPYVAWSSETVAYIPAGSWPLVYGSMQALKGHVQEYPGCQKLEAFAAVDGDGFRVACYTTWDTPEQLEVFLERGYTFERMLRDVADISPAETRVLEKIF*
JGI10216J12902_1112194212F000280GGAGMGTEPPEQERRPAIPLRGYRDTGGEEGRHDRSAVIRAWLILAVIGICYLAWTLTVYFLEPGLR*
JGI10216J12902_1112194213F001935AGGVWVQHLSSLQFLTYCAFFAVVIAAICKFVPGRAAPGRDTPYPDEELHAHDPKTAKYFVAGGLFLVLGSVHMVLKNVPGVAEYLARTGYAGHLVRDLSNTHVMIV
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