Scaffold JGI10216J12902_110321140

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI10216J12902_110321140

Scaffold JGI10216J12902_110321140

Overview

Basic Information
Taxon OID	3300000956 Open in IMG/M
Scaffold ID	JGI10216J12902_110321140 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1890
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Kansas, USA
Coordinates	Lat. (^o)	39.214012	Long. (^o)	-96.585283	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026848	Metagenome / Metatranscriptome	196	Y
F045310	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI10216J12902_1103211403	F026848	AGGAGG	MIRVIGSALVTLAALASPLLAQDDRWQITLDGDQYVWDIRLVRLDGDSLIVRQADARLRVPVAQIKELRLIRKSEVQLGTGATAGAMNALVGGDDEVYDLTTLEYADRIRAVQKILLMHPAQP*
JGI10216J12902_1103211404	F045310	GGAGG	MVRKTREQVWRELDTLGEDEVRRRLAAKPTEVEEPGLIREWLDQRERVNSALADTSRELSARRTGLSKNVKRAIGSAALIGVAAIALGFLLARRKR*

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