Scaffold JGI10216J12902_107228024

Overview

Basic Information

• Taxon OID: 3300000956
• Scaffold ID: JGI10216J12902_107228024
• Source Dataset Name: Soil microbial communities from Great Prairies - Kansas, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1455
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: Kansas, USA
• Coordinates
  • Lat. (^o): 39.214012
  • Long. (^o): -96.585283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004217	Metagenome / Metatranscriptome	448	Y
F020315	Metagenome / Metatranscriptome	224	Y
F057109	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI10216J12902_1072280241	F004217	GGAGG	MEQEDAEFRAANERIAQMAEELRKAELVRDRLEGLDGLMGSYPEGHDMRTRLEALQVDRALEGVNEDIRRLTDALMHPRGT*
JGI10216J12902_1072280242	F020315	GGAGG	VDEKSLQLLKVMREQLGETTGRTVDAGAAAKSLGMYPGTLDRSLLYLVRAGYIEEYADRAITSRNGMFLITLQGIAAIDNA*
JGI10216J12902_1072280243	F057109	AGGAGG	VGENPDREREEVPGRPAVSSENTRDQAKEGREQRAEEGRGDPATRLRLFVRRLFGR*