NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI1027J12803_104348398

Scaffold JGI1027J12803_104348398


Overview

Basic Information
Taxon OID3300000955 Open in IMG/M
Scaffold IDJGI1027J12803_104348398 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: National Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024829Metagenome / Metatranscriptome204Y
F040173Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
JGI1027J12803_1043483981F024829GAGVPLSHLDRRGIWILSGIGAFAVVLLATVVGVTWTRPIIGADNCVYRDKRFLSRAPADQTVILVDQSEALTDTHRRFALTFIKDYVADDSKFSVRS
JGI1027J12803_1043483982F040173N/ARTFVHDAAEIQDACNIVLKRYRQTNARVRQSPAPFYFNNSFTFDGRLVGPPEALSESEERLSQSYESAIKDFSDIARQNDATVQNLRTAEIRRRDYYFNKLERDIREKLIREAWEVKS*

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