NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI1027J12803_101672559

Scaffold JGI1027J12803_101672559


Overview

Basic Information
Taxon OID3300000955 Open in IMG/M
Scaffold IDJGI1027J12803_101672559 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)591
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: National Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000127Metagenome / Metatranscriptome2019Y
F039744Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
JGI1027J12803_1016725591F039744GGAGGMSITSAQSYEMQIARTGDKIADPPEPYWQTVERLFADRGGDHVARLLAYALRDLDKAQ
JGI1027J12803_1016725592F000127N/AIPKECMALLKEASEMFEETGCVPDADGEPVQAETMVPDAKEYISETIDDPKAIYDAAIWDTPGFALVVSWLARKWQRRCQILAPRRSKDPAQHLTKEQQKACLDSAAAELVHEITHGKSFN*

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