Scaffold JGI1027J12803_100089899

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI1027J12803_100089899

Scaffold JGI1027J12803_100089899

Overview

Basic Information
Taxon OID	3300000955 Open in IMG/M
Scaffold ID	JGI1027J12803_100089899 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	18377
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	USA: Maryland: National Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006246	Metagenome / Metatranscriptome	378	Y
F087582	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI1027J12803_10008989911	F006246	AGGTGG	MSALAARPAPMISLQELYRQYTCLAPKPGEPVPLSAFKMSHAETEKVFSIFDEDYHISRFFHFRNEHGDKYSINGEMATHVVIDPDIRLVL*
JGI1027J12803_1000898999	F087582	GGA	MPLAPQNAGGLDHRLALVLYLLLLLAAACPLVMAWLRVLPAEREPFAAPGEKPQKEEHDAFANFLLANISLSLLLRIPGVDSAALTAHAAKWLPSDWANHVVMVGFIWFGFIPGLAAAYALIRPSPVRWPLVIGGILTLGLWLAAPFLLAAIRGAE*

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