Scaffold BBAY94_10076041

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BBAY94_10076041

Scaffold BBAY94_10076041

Overview

Basic Information
Taxon OID	3300000949 Open in IMG/M
Scaffold ID	BBAY94_10076041 Open in IMG/M
Source Dataset Name	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	925
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location Name	Botany Bay, Sydney, NSW, Australia
Coordinates	Lat. (^o)	-33.966629	Long. (^o)	151.166614	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007227	Metagenome / Metatranscriptome	355	Y

Sequences

Protein ID	Family	RBS	Sequence
BBAY94_100760413	F007227	GAG	MKSQGVKKLTKEEIGYKTTDKVRQMWLLNPHDHHMLYVRDNGSFYGFTHMKGEDPEEWFWEAHGIQTELFPPDPPKSHKFTQEQLDRAPHHNMLEKYYGKDWKPKPVEGLAPHF*

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