NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY94_10024994

Scaffold BBAY94_10024994


Overview

Basic Information
Taxon OID3300000949 Open in IMG/M
Scaffold IDBBAY94_10024994 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1676
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000747Metagenome / Metatranscriptome908Y
F017655Metagenome / Metatranscriptome239Y
F017843Metagenome / Metatranscriptome238N

Sequences

Protein IDFamilyRBSSequence
BBAY94_100249941F017843AGGAGMKKLVFALMMLPMSLFAADFDRVGVDVSAFSNDGVHLGIADSGSLRLGLAGDGYTFTFDQDDNDMAISSYGVELSRSDSKKVGVGYGAGIGILDGGVHYNWMASGDHVIGGGTTLTVGGFDLATAADWNLTASNITGTVGTSMDLWGAQASAVSKWDIDDFSYDGLELDAGYAIPVAAGIHITPSVGVGFDSDWSRGDATASVAVILSFGRSAAP*
BBAY94_100249942F017655GGAMTNGFQFSKSLSLGHIVATVGIVIAGFTFIYDLRESIAILQYKGDTVEERLERIQQRTDNQFGQIMDHLERLESKIDEMILERSE*
BBAY94_100249943F000747N/AMKKLLALLLLIPLAGSARMFPTEFPIKAVSWDSVDEAIEYHQDILGEHPIGKGWINTKDDPSFAAIMYNPVKPSWTFLSFHQNEDAVVVCAITGGTQWEILSPGEDKIQL*
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