Scaffold BBAY92_10005775

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BBAY92_10005775

Scaffold BBAY92_10005775

Overview

Basic Information
Taxon OID	3300000947 Open in IMG/M
Scaffold ID	BBAY92_10005775 Open in IMG/M
Source Dataset Name	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3228
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location Name	Botany Bay, Sydney, NSW, Australia
Coordinates	Lat. (^o)	-33.966629	Long. (^o)	151.166614	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F093759	Metagenome	106	Y
F095174	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
BBAY92_100057751	F095174	AGGA	MNDEKNILYKKDYVTAAKTDIRKTFAKFRKEQKQTQKISTVEKTQPTNIVQYKKFR*
BBAY92_100057754	F093759	AGGAGG	MFKVTFYVYSKILNKECRNVEIHKSMDDARLRALALMWQIESVEEIN*

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