Scaffold BBAY92_10000250

Overview

Basic Information

• Taxon OID: 3300000947
• Scaffold ID: BBAY92_10000250
• Source Dataset Name: Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12678
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location

• Location Name: Botany Bay, Sydney, NSW, Australia
• Coordinates
  • Lat. (^o): -33.966629
  • Long. (^o): 151.166614

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032266	Metagenome	180	Y
F093726	Metagenome	106	N
F099330	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
BBAY92_1000025013	F032266	N/A	MKMNKDTVKGVVFIDDAINLSHEELKKKFKEAVDNNQVNYFEIQTRGEQ*
BBAY92_1000025018	F093726	GGAGG	MTYEIAEYKYIGHMRSVYGLKGDLEYPSRKHSKEDSEGNWLLISYNGHKMGKVLKNGKVIA*
BBAY92_100002509	F099330	GAGG	MSLLGEVEEAKLLLGEMREKLNTFIDKINPDDNSLPLDGLHRFIILETDCEDMVDYLSDYDSYDPG*