Scaffold BBAY92_10000166

Overview

Basic Information

• Taxon OID: 3300000947
• Scaffold ID: BBAY92_10000166
• Source Dataset Name: Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14785
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (87.50%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location

• Location Name: Botany Bay, Sydney, NSW, Australia
• Coordinates
  • Lat. (^o): -33.966629
  • Long. (^o): 151.166614

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009045	Metagenome / Metatranscriptome	324	N
F030153	Metagenome / Metatranscriptome	186	Y
F033765	Metagenome	176	N
F052939	Metagenome	142	Y
F058110	Metagenome / Metatranscriptome	135	N
F062256	Metagenome	131	N
F072288	Metagenome / Metatranscriptome	121	N
F079945	Metagenome	115	N
F106097	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
BBAY92_1000016614	F062256	GGAG	MNINPKENEIYAKRSINIGDASIDIDILIPDKLAKHGWRTMLLPMDFYDSHTRLGKMLNKAIADYLTESDDYVVCGMNKDGSLK*
BBAY92_1000016615	F052939	GGAG	MSIEQKILQQIWDTLMKNDKYPDHFNFATDLRYDHSINYNPDNPTINLAILKAGRPTTYKISINEVKNEIIA*
BBAY92_1000016616	F033765	GAGG	MKSLLRTILDECEKNKLMYRANAYDLADNGCEDMIVPWGYDFKALVETMSEFELDERRGNIQIIPESKVKTHAELIDSIRSDLLEYSYEDEERILIKSLTDEQLIEECPDEYYSGHMWIMWTNYGGNEHLDCFTDYTTSLDKYFDVSKLTNEWEDEYNKFRLGLI*
BBAY92_1000016618	F106097	AGGAG	MNRQQMLDILLEENVNGDWTDNYYFEKDNIHIVWCSSLELWLMLDYKTFPKTFESSPTLEEAFKYVFEDQLSTEGIKHFLEERDLICAK*
BBAY92_1000016622	F058110	AGGAG	MKNEYNNVAIHTITFFKFDDEGNELENEDGTIKEFKLKPVRFKPIEYLCEDLDPEYLVEIKETEDE*
BBAY92_1000016633	F079945	N/A	MIEYQGKKVTAKTKVKHELSDVVIAWVDQVVKNPEGVIPDWNQMTAKEQEEFERQAFLLEGKLHKVIGVQFAEIISSNSYTKKI*
BBAY92_100001666	F030153	AGGAGG	MSLIVDFTNIREDAKDELWHHQEMIGYYMMAIGMGEITEKNHLEVYARLVLLQASTLDDSKPWITLRMVKGLINARFNIAFESKAKFSSRMMKATLREVERQETKEVQDVA*
BBAY92_100001667	F072288	AGGAGG	MSQFDSNGELDILEEIKNEICEKLGERMRDTAYSTSSDSYLVKSLVDRGLADSRALPIANALRDGNMNALAFAVCACDEWNFPHLLKIEPRIFWMLLVNETDPVLIQRLEEVMK*
BBAY92_100001668	F009045	GGAG	MNKLSENFTPSRTSRGNRHIVKGQIIQGDEYEVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGVK*