Scaffold BpDRAFT_10594636

Overview

Basic Information

• Taxon OID: 3300000930
• Scaffold ID: BpDRAFT_10594636
• Source Dataset Name: Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 894
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.233
  • Long. (^o): -124.16
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018813	Metagenome / Metatranscriptome	233	Y
F098058	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
BpDRAFT_105946361	F098058	N/A	AQKVHEHIPYSGSQGTSTAASVLNTIDGWGNPFETGTGNYYDGYFYVTIYNSTDSDRDDQVVVFSDQNNASSTTLDFNGNAFKHRDDPDDPDTEISILNEEALANAYSNGDFTLLTSI*
BpDRAFT_105946362	F018813	AGGAG	MTMPCSIAGDMSIGHAGFSPAPITPTTATVLVMSAPPHVVGDLIGPHVLGQAVHTGTXXXXXXXXXVTGDLGLARLMDKGDCQSLILGSAATVMVGG*