Scaffold BpDRAFT_10049297

Overview

Basic Information

• Taxon OID: 3300000930
• Scaffold ID: BpDRAFT_10049297
• Source Dataset Name: Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 765
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.233
  • Long. (^o): -124.16
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030416	Metagenome / Metatranscriptome	185	N
F095316	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
BpDRAFT_100492971	F030416	N/A	MRYKVSSYKASVEQSMLDTAMAQFCDLAEEMNRPTLDTLIADTVTPEELKRRVPTLVH
BpDRAFT_100492972	F095316	N/A	MENSTTVQTTEGTTISVLVKEGKALASIWKQTNSLKHTIKASGFDTRLGKLLQELKAQSTLDSGQISRQTLTMYGINIIDRRRRSEALWFVENEVDCRKFIEDGKFKGTSLTALQKAMRDAEKAETTEGETSNVGQSDAEQPKADATKPRISHKVMVNTIIAQAELNELDLEEIITDLMAVLEKRQAA*