Scaffold BpDRAFT_10037431

Overview

Basic Information

• Taxon OID: 3300000930
• Scaffold ID: BpDRAFT_10037431
• Source Dataset Name: Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6625
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.233
  • Long. (^o): -124.16
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037425	Metagenome / Metatranscriptome	168	Y
F039346	Metagenome / Metatranscriptome	164	Y
F044731	Metagenome / Metatranscriptome	154	Y
F059372	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
BpDRAFT_1003743110	F037425	GGA	MEKKIVKPHYKWDGFRQQYNGIIKNLLNNVDICNRRYAEEGEEGYLVQRKAYIKEIEELKIFIKQKELELGYYTNEEGEK*
BpDRAFT_1003743112	F059372	AGAAG	MTDEEIQGFIDYFGEDKIPNPDHYPQRVMWLMKWYKHIVLENRRKNDNE*
BpDRAFT_100374317	F039346	N/A	MLTSFVITLIECLEIAFITLLISQTQVKKSTTIIYGSLGLIGGLLSAFYLHDILENYEWLMYAILSFLFFYLFANNKEITKHIRQHVDDIRHSSSTVLFLTAFFIYGRESFEIFSNLFLNPNASWIAAGCAVAVAVAIFVFAKDSKLKKYIFRYGYWAYIAFALWFGYEALEHLHIL*
BpDRAFT_100374319	F044731	AGGAG	MIFEDIYRKYEHLTIELIENEESSPLEVAGAMMGQAMKLYKMSLSREDFDSLMTIITHASDLNDRFDDDGFSSGTVH*