NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BpDRAFT_10004618

Scaffold BpDRAFT_10004618


Overview

Basic Information
Taxon OID3300000930 Open in IMG/M
Scaffold IDBpDRAFT_10004618 Open in IMG/M
Source Dataset NameMarine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11380
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River plume, coastal ocean
CoordinatesLat. (o)46.233Long. (o)-124.16Alt. (m)Depth (m)16
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074945Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
BpDRAFT_100046181F074945N/AQVEPSAAAFAHLGDCAKLIVQDIDIAGLKSSGNAETQNVLGANAGAEVGGITEELFDITSTAITSGTMLMAPTQVFPSPESFDAANQRAFAEIEAVKGSISTGLLAYLSEFFQVLPYSETKCRRDTGFIIDAISHDIQYGGNAATVQTAGMYFENAVNTGLQIEQRMGTRDAFLHLAKIVEHVVGAKSITTTLFPRLKTYYTGDILTQYEYWNGIPSYSNTAQDMAVVGANPDTCIAARKLTEIVANAVDDNIETRNTIPERIDVLQTWMSDSFITSKETVERRSDILAESIITYLSNTWNALSFPDAKCRRDIGYIIDSISHDIQHDTNFATLQSAGIYFENGVSVLPVDTKVQYADILSLLGDVVEQVVQEIAVTNASLYTLTPQNLLGTAATATEGTAVHDLVGLIENVVRKDDTDELARPVSTATWIDAELTAAANKIVDNTEELASDVTQFINSSFKVLDYSKAKCRRDTGYLLDAFSFDLNFGGNTASRWNADFYFWNSIYRLPEDQRNPTAKSYRQLGKICKDIVLGEYAGQSVLGEVGTSIESTKVEGLANIFYETQLYNDTKYLPVLIEPDYAYSSVTFTDAQNIIGQRREGLQKDTVRHVNSAYNFIDVNLTRRDARNLLTAVYNDFAYDKFNPGVAAPTYADNGSQNAVRTFTASFFNYDGTHVFPVFNPSDSTLGLKYKGSVNSVADLSTITGQKPKWSYIVATDYATNFYAGDIYYWNGSAWVGAGTNNTDLLDAFAGAWTRMKTYINTNLSPDLEHENMVTGLFDDCLLDNILRPETLIFGSLVESIAHQFNGASAGVNRNALPLNFRNLGQAISAIASVLNEDGGRIRWSGADELNNQYFARGLRINGRTGRIEGRPFTSSVRKLARRASNSRAVV*

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