NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NpDRAFT_10279167

Scaffold NpDRAFT_10279167


Overview

Basic Information
Taxon OID3300000929 Open in IMG/M
Scaffold IDNpDRAFT_10279167 Open in IMG/M
Source Dataset NameMarine plume microbial communities from the Columbia River - 15 PSU
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3715
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River plume, coastal ocean
CoordinatesLat. (o)46.239Long. (o)-124.161Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101031Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
NpDRAFT_102791673F101031GAGGMMQGEALHESISKLLTDRLAKRQGEKLNSSVCSEIYQDIFFSLSEIVKESSVPLTNESVNFIAQMYYDAVTINGGQELDPNIFTQRASLSNIETKEVALMAMMFNKTAFAVPFISEVKRRS*

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