NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NpDRAFT_10175865

Scaffold NpDRAFT_10175865


Overview

Basic Information
Taxon OID3300000929 Open in IMG/M
Scaffold IDNpDRAFT_10175865 Open in IMG/M
Source Dataset NameMarine plume microbial communities from the Columbia River - 15 PSU
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2026
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River plume, coastal ocean
CoordinatesLat. (o)46.239Long. (o)-124.161Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028183Metagenome / Metatranscriptome192N
F082707Metagenome113N

Sequences

Protein IDFamilyRBSSequence
NpDRAFT_101758651F082707AGGMWYHKKFNLQYDKNVFNEIIEYAKTAEWKQGYDQNGLLWNVEELPLDPKQFPILNELYEGLNVEFKRPSFFISNVKPGGLVNHIDHRKWGNLGIPLLGNFEKTPQFFYDQFNHPVESFVVDSPVIFNTRMLH
NpDRAFT_101758653F028183N/APTLWYDRNYLLDHLDNIDNDDWYQFDCGHIRWTVQEAFNPRLECKNYKWSEFHYELASLFTPAITPDTMLYTSTPIGGTPPHQDRNRPAVLNFAVKGKFGDTSPQTFYEDFDRQTKKFTMPYSVSKYTNEFAPWMFKGPEIHGVDNDNDPDRVIITCCWRHNSYEDIERSMLNGSLINWEQNEKNKRVKFI*

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