Basic Information | |
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Taxon OID | 3300000929 Open in IMG/M |
Scaffold ID | NpDRAFT_10127235 Open in IMG/M |
Source Dataset Name | Marine plume microbial communities from the Columbia River - 15 PSU |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Maryland |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 860 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River plume, coastal ocean | |||||||
Coordinates | Lat. (o) | 46.239 | Long. (o) | -124.161 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000473 | Metagenome / Metatranscriptome | 1097 | Y |
F023851 | Metagenome / Metatranscriptome | 208 | Y |
F073544 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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NpDRAFT_101272351 | F000473 | N/A | EFINKDKDHFKHGINLWNGEPNKAVFYTKEMSTKIRELKKPVIDLQLDVVQYPEFLAVRLYEDNFIQYEGIKKEQVIDYVGKVKKLIESYGVRCELEGVPSARILRSN* |
NpDRAFT_101272352 | F073544 | GGAG | LKGYQVREYYEVINIVFIHEERLWGTCDSLGLYASKIKYQKDGIEYEDMFDNEEFTVMEEIVLEHSEEEN* |
NpDRAFT_101272354 | F023851 | N/A | MCETCISSKFEPRWVIILAGRQLGSDSVKEFIIKKRYHGNDIAASELLV* |
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