NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NpDRAFT_10061557

Scaffold NpDRAFT_10061557


Overview

Basic Information
Taxon OID3300000929 Open in IMG/M
Scaffold IDNpDRAFT_10061557 Open in IMG/M
Source Dataset NameMarine plume microbial communities from the Columbia River - 15 PSU
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9982
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River plume, coastal ocean
CoordinatesLat. (o)46.239Long. (o)-124.161Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009267Metagenome / Metatranscriptome320N
F011222Metagenome / Metatranscriptome293N
F023103Metagenome211N
F046247Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
NpDRAFT_100615574F023103N/AMAKFKFESVKFEQIMKDYATIREVTIPDAVMLNARLLCVELARRTQPFGDKQESGTIRVKNDIGKIIKNTEQLDEYADRVGSQRIKARLKALIKSGKFDIVETILRNIGFLNKWTGMEVISGSKMKSVHNQARNKTTGRTKSRGSKLFIASDSDHATYIEEVQKRVGISKGGWADCATQLKKVNKGGLLANFPPWVKKAMRSGSGKVKDMTSDLKNPRVEMTNDIPWARNVITKSEEEFAKAVIVTKMKTQMNTILKKRQKTLA*
NpDRAFT_100615575F009267N/AMKKTQNTDLVKDDEILRIQAMEDGPKKVNGRILRPITALTISWMQRNEIFSGNMDLVWKAAAFAFLHSEPTSAIRSVVNDRDTFVNAVDSWIEKNMAHHLEVGSMSDAMNSAFELYNASATESKSGSGSPN*
NpDRAFT_100615576F011222N/AMECNKKFFHTINLKAAVALATLNFKMNKPPVTRLVRTDGKESTEFWFEGENDKGQDASQIYRQMTKEGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK*
NpDRAFT_100615578F046247N/AMIISPNEQGWAFDESTAWKLVYDGSTIIFFDETEKAISTQSVLFVGTKGECEAEIARLGLVDVTAQENDNGLDLHADS*
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