Basic Information | |
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Taxon OID | 3300000929 Open in IMG/M |
Scaffold ID | NpDRAFT_10052016 Open in IMG/M |
Source Dataset Name | Marine plume microbial communities from the Columbia River - 15 PSU |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Maryland |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5619 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (55.56%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River plume, coastal ocean | |||||||
Coordinates | Lat. (o) | 46.239 | Long. (o) | -124.161 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015601 | Metagenome / Metatranscriptome | 253 | Y |
F066790 | Metagenome / Metatranscriptome | 126 | N |
F080054 | Metagenome / Metatranscriptome | 115 | N |
Protein ID | Family | RBS | Sequence |
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NpDRAFT_1005201615 | F066790 | AGCAGG | MGLLKMLSNLMQRVRDMFKPYTLEDFIVDADPKDYKDIQRLESVWHNYQERKLFNNCY* |
NpDRAFT_100520163 | F080054 | N/A | NYTAELEALILDVLLPVYEQHCRQRGIASLRSEINPELLKQLRKKKTVPRLFMPKTNI* |
NpDRAFT_100520168 | F015601 | GGAG | MAGYTKEFLVDAFMSRYVGCDHLSIEKLERLEKMAHDLYDRVGRDQFRVYSCLDAEAIREYKTKVIT* |
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