Scaffold NpDRAFT_10042520

Overview

Basic Information

• Taxon OID: 3300000929
• Scaffold ID: NpDRAFT_10042520
• Source Dataset Name: Marine plume microbial communities from the Columbia River - 15 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6517
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter → Prosthecobacter debontii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.239
  • Long. (^o): -124.161
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006936	Metagenome / Metatranscriptome	361	N
F014504	Metagenome / Metatranscriptome	262	N
F034928	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
NpDRAFT_100425202	F006936	N/A	MEQNEITALTLPVIETEIRTAYAEANALAVTAKGNARAAVLRMADCGQMLMVAKDHVRGNRNEWLASLGIDQDKAAKAIHLARNRDQLELELWPADMAKLGAQMLGILPPPGSSGREENDPERTTGASTHWLTYAGKLQRSFADLFTRKPVDQWRADERESLRVSLKPIVEIYNKLI*
NpDRAFT_100425203	F014504	N/A	MHDLTRDAAEYDEASYTPDFYSFDDPTAGHAFRMTAYREASEKLLVVLNKTISFLAEHGYSRSKTLWGVAFALGHPLTAGMSMLEAGRELGCTKQAISKIAMDFLDTTGLPPSTSLKSEEARNTYRKTNTNKYGTKRNNGAHAASH*
NpDRAFT_100425207	F034928	AGG	MNNQMQWRGYPLRCWPNHQDDCYRWDWEIQIDGKWVEVVTQATRWIEDEAEETLQRYLERKKT*