Scaffold NpDRAFT_10030945

Overview

Basic Information

• Taxon OID: 3300000929
• Scaffold ID: NpDRAFT_10030945
• Source Dataset Name: Marine plume microbial communities from the Columbia River - 15 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7255
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.239
  • Long. (^o): -124.161
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008881	Metagenome / Metatranscriptome	326	Y
F081332	Metagenome / Metatranscriptome	114	N
F096652	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
NpDRAFT_1003094512	F096652	N/A	MTSRKKTKTKFQLFLRRVGFLCKKPQPPKKGVRISRTYMPDGSVIEHGGFVEEAPLNNQSFLSELHIYHEIKNSVNYTQPKKNNTK*
NpDRAFT_1003094513	F008881	N/A	MKKVVCINDRKLPEGAEVVNGREYEVLEEFVNNYDQRVFIIAGIKNEGTTKMGLRWIGYDAARFANLESIAIESYEHAYAEN*
NpDRAFT_100309453	F081332	N/A	MEVLNLQNFTLPNSQQSISAAFDSVNLINNTILELVSNDNKSTVTRNVQHLEIMLSKEWFLEALTQQQLTDINSCIANGNSYTAEPIIEDIVTEEV*