Scaffold NpDRAFT_10000945

Overview

Basic Information

• Taxon OID: 3300000929
• Scaffold ID: NpDRAFT_10000945
• Source Dataset Name: Marine plume microbial communities from the Columbia River - 15 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43901
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (82.81%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.239
  • Long. (^o): -124.161
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024091	Metagenome / Metatranscriptome	207	Y
F025393	Metagenome / Metatranscriptome	202	Y
F042905	Metagenome / Metatranscriptome	157	N
F060814	Metagenome / Metatranscriptome	132	N
F072012	Metagenome / Metatranscriptome	121	Y
F080057	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
NpDRAFT_1000094519	F024091	AGGA	MSKIQEKLNSIMDEIQALMESHPRAHLEEGSNIHKLMASAGLYFAHMDDENKDYYQFVSMAIEEEREWNL*
NpDRAFT_1000094521	F025393	N/A	SKRLLRSQYEYRIQYEQQYIQEETIPALNTPEDCHKYAMFVKGNEYFDNGRTYVFKDEFGKYVSTFVSQYSDIIEKNLEPGVKDAVLALQKKGYLTFTSCQGHADSKHRYIGVVFNTKEQKGQFMKEVRDLRCDIHWYDNVINSKERPCSEVPWWSEGGITLHIVWDDHSYDKVSQMERREKPYTDEELTKFWNVQMWRNYKHYECVVFSFGYPMVEKTLWERIHKYFFYNQYKVTSAYHDFCNKVNKLTEYLG*
NpDRAFT_1000094554	F080057	AGGA	MLNNEWQDIVINGKKLEEFSAISDMGTYKIQVNLEILEGCSYMCPGCFVKRRGNWNPKSINLFHALAYELKDRTDIVLDDIVIGPTDFYGAENLEEIINNPRLADAILMMPEDNRNVQHNCSILGSLSEEDIDGKIKAIENSPLGKAVEAWDVQIALDLNRLMTDIIYMEALDRRIETFKNSSLNFEISMATNIVQGVEEILFAAIDFVRTKYETVIEVLPSVVRSFNHSAKHGDKLFEWNDMLTRLSVDQNRFKNKFHFLQGDVSHKAFHYSVVSLYQGDMYMSPFIYENAQIHIDDFKVPVNGSLVDSILNKKNEVVNRQIENSSDKECGSCKYLNICANRMVPMIMDTVFDGRKECILNKDVISLYDDEVYHGNSY*
NpDRAFT_1000094555	F072012	N/A	LDFIPSVSRSHKANIILETLDKFNEYFNVLTRDSTMNNIMVDHSHAGMNYTVLNYKRGDWYLSPFMYENMAIYHDMFKVETFEDAVTITESQIDRAKNTECESCPMFFSCYNRKIILLRDYLGVDRCIAPKENMINNIHNFNQPAQEMYDWEGYSVDADKQGYRKKFLVTEDGDERLDRIKDISYVK*
NpDRAFT_1000094556	F060814	AGGAG	MPIIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASEVHQLESAKEFIKEITDKGILVDEMLIGPTDFLASENFYEVMPHLVDIVNENSPILAFVSTLIDGDIPRFCQFLKDNINLDTEIEIGIATNPHKFMSLDYMSNIQSKLKYLDENIDHEITYTFVVNIKDY
NpDRAFT_1000094557	F042905	N/A	MIVHLNKTHAGYYNYEENKSPINNDFLRTEINLDILHGCSQMCPGCFIPRKNLTNADHLTTLYKTLLEGSYYPDEIVVGPTDIFDAENFDEIMEHSSMKDLYGISAIGFLTTLNQPIEVIKEKLDKIWSLYEGIDRIPDIDFKIVLDINQYINKDIRMADWYKKLALFEEGSVQLRVNWYEGIFDKISYNDLCQKVFDDFNAPIVITPSFLTDRNVRGKVDKHLKMFREDLINQNIDSKWRNLYTFFDSSFNGYGCQNYSFYNGKIYVNPFLYDAIIQRTPEFESRIDEPKLYENLDYAKTTDDCNKCEFLMSCAERNVHMYMKSRNIKGCVALKEYMHADN*