Scaffold OpTDRAFT_10064253

Overview

Basic Information

• Taxon OID: 3300000928
• Scaffold ID: OpTDRAFT_10064253
• Source Dataset Name: Marine plume microbial communities from the Columbia River - 25 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5443
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.233
  • Long. (^o): -124.16
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F006845	Metagenome / Metatranscriptome	363	Y
F013088	Metagenome / Metatranscriptome	274	Y
F018155	Metagenome / Metatranscriptome	236	Y
F036651	Metagenome / Metatranscriptome	169	N
F037180	Metagenome	168	Y
F058166	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
OpTDRAFT_1006425311	F006845	N/A	MDLNSYLLQEDFEEFCRKAYERIQIACDVFNITNDEDYYSFKERCYTQLEADYLNSIERTIH*
OpTDRAFT_1006425312	F058166	GGAG	MDILGGMSNSSESQQVYLAFKTADQQFFVNGQTPIDFKYLQLDPATFKSGWGRYAGEYQYVWDDKFGNASEKPADDWKRAFSCCVMPHGHDHALIWSRFTFAESSAFNKILSSFWNQMDANSNSLPVVEYKGSKEIQVGIGRSSELSFEFSKFAPRFDNFVIPAFYDKENEPVEDTFKSPNDGLAEKVQEMVDKNELSDDDIPF*
OpTDRAFT_100642532	F037180	N/A	MNELAKVDDKSTLNISLSYLLQIISVIALAVWGYAITKEAIDLNDREIQNLRANQNKYIFPDIRVLEEQVVELEKQVLILQTELDLHKKQDK*
OpTDRAFT_100642534	F001942	N/A	MPKKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLIVEFGNAIYTVQVKSRRATKEKKFVFAAENSRSMSDTYKNYTCDILAFVFFFDSQKRIMFKSNTSSQNYFTFDKKIITDTMELDSLKESLDTLSSVPVLNPII*
OpTDRAFT_100642535	F036651	N/A	MDIHLHEVGKVAPLILTKRQIRGYYKDYLTGENKVQTANEEYVVRDSLTEIAYLMGEQR*
OpTDRAFT_100642537	F013088	AGGAG	MDEKTKKALWISEELHKEIKIFAIQNNMTIESASQMVLKLGMCSYKDSNGSKQ*
OpTDRAFT_100642538	F018155	AGGA	MGQNSKAVAKRREELKAEKLDKQLAYYYFQKGAGTHYREIQYASGKIVRTDFNA*